Articles, papers, presentations, and other materials authored by faculty from the Chemistry department of Loyola University Chicago's College of Arts & Sciences.

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Submissions from 2016

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Thermally Selective Formation of Subsurface Oxygen in Ag(111) and Consequent Surface Structure, Jonathan Derouin, Rachael G. Farber, Marie E. Turano, Erin V. Iski, and Daniel Killelea

Submissions from 2015

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Steps Toward Accurate Large Area Analyzes of Genesis Solar Wind Samples: Evaluation of Surface Cleaning Methods Using Total Reflection X-ray Fluorescence Spectrometry, Martina Schmeling, Donald S. Burnett, Amy JG Jurewicz, and Igor V. Veryovkin

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Grazing Incidence X-ray Fluorescence Measurements of Genesis Sample 30580 for Determination of Manganese and Nickel Fluences, Martina Schmeling, J. Davidson, P.J. Eng, J.E. Stubbs, A.J.G. Jurewicz, and D.S. Burnett

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Effects of Mutations on the Molecular Dynamics of Oxygen Escape from the Dimeric Hemoglobin of Scapharca inaequivalvis, Kevin Trujillo, Tasso Papagiannopoulos, and Kenneth W. Olsen

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Preparation of Scanning Tunneling Microscopy Tips Using Pulsed Alternating Current Etching, Victor A. Valencia, Avesh A. Thaker, Johnathan Derouin, Damian N. Valencia, Rachael G. Farber, Dana A. Gebel, and Daniel Killelea

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The Crystal Structure of Nitrosomonas Europaea Sucrose Synthase Reveals Critical Conformational Changes and Insights into the Sucrose Metabolism in Prokaryotes, Rui Wu, Matías D. Asención Diez, Carlos M. Figueroa, Matías Machtey, Alberto A. Iglesias, Miguel Ballicora, and Dali Liu

Submissions from 2014

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A Novel Dual Allosteric Activation Mechanism of Escherichia coli ADP-Glucose Pyrophosphorylase: The Role of Pyruvate, Matías D. Asención Diez, Mabel C. Aleanzi, Alberto A. Iglesias, and Miguel Ballicora

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Molecular Interactions with Ice: Molecular Embedding, Adsorption, Detection, and Release, K D. Gibson, Grant G. Langlois, Wenxin Li, Daniel Killelea, and S J. Sibener

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Catalytic Kinetic Resolution of a Dynamic Racemate: Highly Stereoselective β-Lactone Formation by N-Heterocyclic Carbene Catalysis, Ryne C. Johnston, Daniel T. Cohen, Chad C. Eichman, Karl A. Scheidt, and Paul Ha-Yeon Cheong

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Cellulose Acetate Replica Cleaning Study of Genesis Non-Flight Sample 3CZ00327, K.R. Kuhlman, Martina Schmeling, C.P. Gonzalez, J.H. Allton, and D.S. Burnett

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Parkinson Disease-Associated Mutation R1441H in LRRK2 Prolongs the “Active State” of its GTPase Domain, Jingling Liao, Chun-Xiang Wu, Christopher Burlak, Sheng Zhang, and Dali Liu

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The Dimerization Domain in DapE Enzymes Is Required for Catalysis, Boguslaw Nocek, Anna Starus, Magdalena Makowska-Grzyska, Blanca Gutierrez, Stephen Sanchez, Robert Jedrzejczak, Jamey C. Mack, Kenneth W. Olsen, Andrzej Joachimiak, and Richard C. Holz

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Differentiation of Surface Contaminants and Implanted Material on Genesis Solar Wind Samples Using Total Reflection X-Ray Fluorescence Spectometry and Grazing Incidence X-Ray Fluorescence, Martina Schmeling, Peter J. Eng, J.E. Stubbs, Y. Choi, and Igor V. Veryovkin

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Heavy Metal Analysis in Lens and Aqueous Humor of Cataract Patients by Total Reflection X-Ray Fluorescence Spectrometry, Martina Schmeling, Bruce I. Gaines, and Susanne Tidow-Kebritchi

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Analysis of Genesis Sample 60234 by Laboratory Total Reflection X-ray Fluorescence Spectrometry and Synchrotron Grazing Incidence X-ray Fluorescence, Martina Schmeling, E. Hwang, Y. Choi, P.J. Eng, J.E. Stubbs, and I.V. Veryovkin

Submissions from 2013

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Spectroscopic Evidence of Work Function Alterations Due to Photoswitchable Monolayers on Gold Surfaces, Matthew Alan Bartucci, Jan Florian, and Jacob W. Ciszek

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Apparent Alkyl Transfer and Phenazine Formation via an Aryne Intermediate, Daniel Becker, Andria M. Panagopoulos, Doug Steinman, Alexandra Goncharenko, Kyle Geary, Carlene Schleisman, Elizabeth Spaargaren, and Matthias Zeller

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Statistical Analysis of Aerosol Species, Trace Gases, and Meteorology in Chicago, Katrina Binaku, Timothy O'Brien, Martina Schmeling, and Tinamarie Fosco

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Unraveling the Activation Mechanism of the Potato Tuber ADP-Glucose Pyrophosphorylase, Carlos M. Figueroa, Misty L. Kuhn, Christine A. Falaschetti, Ligin Solamen, Kenneth W. Olsen, Miguel Ballicora, and Alberto A. Iglesias

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Large-scale Structural Rearrangement of a Serine Hydrolase from Francisella Tularensis Facilitates Catalysis, Ekaterina V. Filippova, Leigh A. Watson, Misty L. Kuhn, Brett Geissler, and Daniel Becker

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Lysine Biosynthesis in Bacteria: A Metallodesuccinylase as a Potential Antimicrobial Target, Danuta M. Gillner, Daniel P. Becker Ph.D., and Richard C. Holz

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On the origin of mode- and bond-selectivity in vibrationally mediated reactions on surfaces, Daniel Killelea and Arthur L. Utz

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The Ancestral Activation Promiscuity of ADP-glucose Pyrophosphorylases from Oxygenic Photosynthetic Organisms, Misty L. Kuhn, Carlos M. Figueroa, Alberto A. Iglesias, and Miguel Ballicora

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Investigating the Electrostatic Role of a Critical Arginine for the Catalysis of E. Coli ADP-Glucose Pyrophosphorylase, Angela Mahaffey, Saleh Aiyash, Miguel Ballicora, and Ligin Solamen

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Identification of a Histidine Metal Ligand in the argE-Encoded N-Acetyl-L-Ornithine Deacetylase from Escherichia coli, Wade C. McGregor, Danuta M. Gillner, Sabina I. Swierczek, Dali Liu, and Richard C. Holz

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Functionalization of Organic Semiconductor Crystals via the Diels-Alder Reaction, Brittni A. Qualizza, Srividya Prasad, M. Paul Chiarelli, and Jacob W. Ciszek

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Functionalization of Organic Semiconductor Crystals via the Diels–Alder Reaction, Brittni A. Qualizza, Srividya Prasad, M. Paul Chiarelli, and Jacob W. Ciszek

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Rearrangement of Cyclotriveratrylene (CTV) Diketone: 9,10-Diarylanthracenes with OLED Applications, Samuel R. Sarsah, Marlon R. Lutz Jr., Matthias Zeller, David S. Crumrine, and Daniel Becker

Submissions from 2012

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Parallel Text Immersion, Daniel P. Becker Ph.D.

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Crystal Structure of Bacillus Subtilis GabR, an Autorepressor and Transcriptional Activator of gabT, Raji Edayathumangalam, Rui Wu, Roman Garcia, Yuguang Wang, and Wei Wang

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Asymmetric α-hydroxy Ketone Synthesis by Direct Ketone Oxidation Using a Bimetallic Palladium(II) Complex, Othman A. Hamed, Arab El-Qisairi, Hanan Qaseer, Emad M. Hamed, Patrick M. Henry, and Daniel Becker

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Conformational and Thermodynamic Properties Modulate the Nulceotide Excision Repair of 2-Aminofluorene and 2-Acetylaminofluorene dG Adducts in the NarI Sequence, Vipin Jain, Benjamin Hilton, Satyakam Patnaik, Yue Zou, M. Paul Chiarelli, and Bongsup P. Cho

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Synthesis, Crystal Structure, and Rearrangements of ortho-Cyclophane Cyclotetraveratrylene (CTTV) tetraketone, Marlon R. Lutz Jr., Matthias Zeller, Samuel R.S. Sarsah, Artur Filipowicz, Hailey Wouters, and Daniel Becker

Submissions from 2011

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MMP-13 Selective α-sulfone Hydroxamates: a Survey of P1' Heterocyclic Amide Isosteres, Thomas E. Barta, Daniel P. Becker, Louis J. Bedell, and Alan M. Easton

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The Unsuspected Pathway of the Allosteric Transition in Hemoglobin, Stefan Fischer, Kenneth W. Olsen, Kwangho Nam, and Martin Karplus

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MMP-13 Selective Alpha-sulfone Hydroxamates: Identification of Selective P1' Amides, Yvette M. Fobian, John N. Freskos, Thomas E. Barta, Louis J. Bedell, and Daniel Becker

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Direct Patterning of a Cyclotriveratrylene Derivative for Directed Self-Assembly of C60, Zachary R. Osner, Dorjderem Nyamjav, Richard C. Holz, and Daniel P. Becker

Submissions from 2010

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Orally Bioavailable Dual MMP-1/MMP-14 Sparing, MMP-13 Selective Alpha-sulfone Hydroxamates, Daniel Becker, Stephen A. Kolodziej, Susan L. Hockerman, Terri L. Boehm, and Jeffery N. Carroll

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Orally Active MMP-1 Sparing α-tetrahydropyranyl and α-piperidinyl Sulfone Matrix Metalloproteinase (MMP) Inhibitors with Efficacy in Cancer, Arthritis, and Cardiovascular Disease, Daniel P. Becker, Thomas E. Barta, Louis J. Bedell, and Terri L. Boehm

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Palladium(II)-Catalyzed Dicarboxymethylation of Chiral Allylic Alcohols: Chirality Transfer Affording Optically Active Diesters Containing Three Contiguous Chiral Centers, Othman Hamed, Patrick M. Henry, and Daniel P. Becker

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MMP-13 Selective Isonipecotamide Alpha-sulfone Hydroxamates, Stephen A. Kolodziej, Susan L. Hockerman, Gary A. DeCrescenzo, Joseph J. McDonald, Grace E. Munie, Theresa R. Fletcher, Nathan Stehle, Craig Swearingen, and Daniel Becker

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Synthesis of an Ortho-Triazacyclophane: N,N',N''-Trimethyltribenzo-1,4,7-triazacyclononatriene, Andria M. Panagopoulos, Matthias Zeller, and Daniel P. Becker

Submissions from 2009

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A Thermodynamic and Kinetic Characterization of the Solvent Dependence of the Saddle-Crown Equilibrium of Cyclotriveratrylene (CTV) Oxime, David C. French, Marlon R. Lutz Jr., Chichi Lu, Matthias Zeller, and Daniel Becker

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Inhibitors of Bacterial N-Succinyl-L,L-diaminopimelic Acid Desuccinylase (DapE) and Demonstration of In Vitro Antimicrobial Activity, Danuta Gillner, Nicola Armoush, Richard C. Holz, and Daniel P. Becker

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Universal Scaling of Nonequilibrium Transport in the Kondo Regime of Single Molecule Devices, G D. Scott, Z K. Keane, Jacob W. Ciszek, J M. Tour, and D Natelson

Submissions from 2008

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Synthesis of Substituted 2-Amino-Cyclobutanones, Nicola Armoush, Preeti Syal, and Daniel P. Becker

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Beckmann Rearrangement of Cyclotriveratrylene (CTV) Oxime: Tandem Beckmann-Electrophilic Aromatic Addition, Marlon R. Lutz Jr., Matthias Zeller, and Daniel P. Becker

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Simultaneous Measurements of Electronic Conduction and Raman Response in Molecular Junctions, Daniel R. Ward, Naomi J. Halas, James M. Tour, Jacob W. Ciszek, Yanpeng Wu, Peter Nordlander, and Douglas Natelson

Submissions from 2007

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Isolation of the Saddle and Crown Conformers of Cyclotriveratrylene (CTV) Oxime, Marlon R. Lutz Jr., David C. French, Peter Rehage, and Daniel P. Becker

Submissions from 2006

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Pyrrolizidine Esters and Amides as 5-HT4 Receptor Agonists and Antagonists, Daniel Becker, Daniel L. Flynn, Alan E. Moormann, and Roger Nosal

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Controlling Charge Injection in Organic Field-Effect Transistors Using Self-Assembled Monolayers, B H. Hamadani, D A. Corley, Jacob W. Ciszek, J M. Tour, and D Natelson

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Three-Terminal Devices to Examine Single Molecule Conductance Switching, Z K. Keane, Jacob W. Ciszek, J M. Tour, and D Natelson

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Single-Molecule Transistors: Electron Transfer in the Solid State, Douglas Natelson, Lam H. Yu, Jacob W. Ciszek, Zachary K. Keane, and James M. Tour

Submissions from 2005

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Synthesis and Structure-Activity Relationships of ß- and a-Piperidine Sulphone Hydroxamic Acid Matrix Metalloproteinase Inhibitors with Oral Antitumor Efficacy, Daniel Becker, Clara I. Villamil, Thomas E. Barta, and Louis J. Bedell

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Kondo Resonances and Anomalous Gate Dependence in the Electrical Conductivity of Single-Molecule Transistors, L H. Yu, Z K. Keane, Jacob W. Ciszek, L Cheng, J M. Tour, T Baruah, M R. Pederson, and D Natelson

Submissions from 2004

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Azaadamantane Benzamide 5-HT4 Agonists: Gastrointestinal Prokinetic SC-54750, Daniel Becker, Daniel L. Flynn, Robert L. Shone, and Gary Gullikson

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Bridgehead-methyl Analog of SC-53116 as a 5-HT4 Agonist, Daniel Becker, Daniel L. Flynn, and Clara I. Villamil

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Inelastic Electron Tunneling via Molecular Vibrations in Single-Molecule Transistors, L H. Yu, Z K. Keane, Jacob W. Ciszek, L Cheng, M P. Stewart, J M. Tour, and D Natelson

Submissions from 2001

Selective, Orally Active MMP Inhibitors with an Aryl Backbone, Thomas Barta, Daniel P. Becker, Louis J. Bedell, and Gary A. De Crescenzo

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Alpha-Alkyl-alpha-amino-beta-sulphone Hydroxamates as Potent MMP Inhibitors that Spare MMP-1, Daniel Becker, Gary A. DeCrescenzo, John Freskos, and Daniel P. Getman

Submissions from 2000

Synthesis and Activity of Selective MMP Inhibitors with an Aryl Backbone, Thomas Barta, Daniel P. Becker, Louis J. Bedell, and Gary A. De Crescenzo

Submissions from 1999

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Enantioselective Synthesis of Dual Serotonergic Azanoradamantane SC-52491, Daniel Becker, Robert K. Husa, Alan E. Moormann, and Clara I. Villamil

Submissions from 1997

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Serotonin 5-HT4 Agonist Activity of a Series of Meso-Azanoradamantane Benzamides, Daniel Becker, Roger Nosal, Clara I. Villamil, and Gary Gullikson

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Synthetic Strategies for the Construction of Enantiomeric Azanoradamantanes, Daniel Becker, Roger Nosal, Daniel L. Zabrowski, and Daniel Flynn

The Herpesvirus Protease: Mechanistic Studies and Discovery of Inhibitors of the Human Cytomegalovirus Protease, Daniel L. Flynn, Daniel P. Becker, Vickie Dilworth, and Maureen Highkin

Submissions from 1996

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Preparation of Trifluoromethyl Lactol Derivatives via Base Initiated Cyclobutanol Ring Opening to a Laterally Lithiated Trifluoromethyl Ketone, Daniel Becker and Daniel L. Flynn

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One-Pot Preparation of 1,3-Dihydro-1- (Trifluoromethyl)isobenzofuran-1-ol Derivatives from 1,2-Dibromobenzene, Daniel Becker, Hui Li, and Daniel L. Flynn

Submissions from 1993

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Isolation of a Highly Functionalized Troeger’s Base Derivative via a Novel Reaction, Daniel Becker, Patricia M. Finnegan, and Paul W. Collins

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Studies of the Solid-Phase Pauson-Khand Reaction Selective in-situ Enone Reduction to 3-Azabicyclo[3.3.0]oct-anones, Daniel Becker and Daniel L. Flynn

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Synthesis of N-BOC-3-azabicyclo[3.3.0]octan-7-one via reductive pauson-khand cyclization and subsequent conversion to a novel diazatricyclic ring system, Daniel Becker and Daniel L. Flynn

Submissions from 1992

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A Short Synthesis of 1-Azaadamantan-4-one and the syn and anti Isomers of 4-Amino-1-azaadamantane, Daniel P. Becker and Daniel L. Flynn

Use of Atom-transfer Radical Cyclizations as an Efficient Entry into a New Serotonergic Norazaadamantane, Daniel L. Flynn, Daniel Becker, Roger Nosal, and Daniel Zabrowksi

New (Nor)Aza-Adamantanes Are Agonists at the Newly Identified Serotonin 5HT4 Receptor and Antagonists at the 5HT3 Receptor, Daniel L. Flynn, Daniel Becker, Dale P. Spangler, and Roger Nosal

1,3,4-Trisubstituted Pyrrolidinones as Scaffolds for Construction of Peptidomimetic Cholecystokinin Antagonists , Daniel L. Flynn, Clara I. Villamil, Daniel Becker, and Gary W. Gullikson

SC-53116: The First Selective Agonist at the Newly Identified Serotonin 5-HT4 Receptor Subtype, Daniel L. Flynn, Daniel Zabrowski, Daniel Becker, and Roger Nosal

Submissions from 1988

Organometallic Chemistry Can Simplify the Synthesis of Important Biologically Active Natural Products, Daniel Becker, P Carter, J. Elliott, and R. Lewis

Submissions from 1987

Stereospecific Dicobalt Octacarbonyl Mediated Enyne Cyclization for the Enantiospecific Synthesis of a 6a-Carbocycline Analogue, Philip Magnus and Daniel Becker

Submissions from 1984

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Copper and Barium as Dietary Discriminants: the Effects of Diagenesis, J B. Lambert, S V. Simpson, Carole B. Szpunar, and J E. Buikstra