Document Type

Conference Proceeding

Publication Date

12-17-2015

Publication Title

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Pages

1098-1099

Publisher Name

IEEE

Abstract

Through high-throughput RNA sequencing (RNAseq), transcriptomes for a single cell, tissue, or organism(s) can be ascertained at a high resolution. While a number of bioinformatic tools have been developed for transcriptome analyses, significant challenges exist for studies of non-model organisms. Without a reference sequence available, raw reads must first be assembled de novo followed by the tedious task of BLAST searches and data mining for functional information. We have created a pipeline, PyRanger, to automate this process. The pipeline includes functionality to assess a single transcriptome and also facilitate comparative transcriptomic studies.

Identifier

10.1109/BIBM.2015.7359834

Comments

Author Posting © IEEE, 2015. This is the author's version of the work. It is posted here by permission of IEEE for personal use, not for redistribution. The definitive version was published in Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), December, 2015. http://dx.doi.org/10.1109/BIBM.2015.7359834%20%20

Creative Commons License

Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 License
This work is licensed under a Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 License.

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