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Submissions from 2020

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Draft Genome Sequence of Corynebacterium coyleae UMB8490, Isolated from the Female Urinary Tract, Abbas Ali Khan, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Draft Genome Sequence of Proteus mirabilis UMB1310, Isolated from the Female Urinary Tract, Olivia Allen, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Draft Genome Sequence of Escherichia coli UMB9246, Isolated from the Bladder of a Woman with Recurrent Urinary Tract Infection, Mikalina Belmonte, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Draft Genome Sequence of Klebsiella pneumoniae UMB7779, Isolated from the Female Urinary Tract, Pavan Bhimalli, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

Characterization and Spontaneous Induction of Urinary Tract Streptococcus Anginosus Prophages, Bridget Brassil, Carine R. Mores, Alan J. Wolfe, and Catherine Putonti

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Draft Genome Sequence of Escherichia coli UMB1353, Isolated from the Female Urinary Tract, Tanea Crawford, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Best Practices for Successfully Writing and Publishing a Genome Announcement in Microbiology Resource Announcements, Julie C. Dunning Hotopp, David A. Baltrus, Vincent M. Bruno, John J. Dennehy, Steven R. Gill, Julia A. Maresca, Jelle Matthijnssens, Irene L. G. Newton, Catherine Putonti, David A. Rasko, Antonis Rokas, Simon Roux, Jason E. Stajich, Kenneth M. Stedman, Frank J. Stewart, and J. Cameron Thrash

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Draft Genome Sequence of Corynebacterium aurimucosum UMB7769, Isolated from the Female Urinary Tract, Samantha Eskandar, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Draft Genome Sequence of Proteus mirabilis Strain UMB0038, Isolated from the Female Bladder, Noreen Gallian, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Genomic Survey of E. coli From the Bladders of Women With and Without Lower Urinary Tract Symptoms, Andrea Garretto, Taylor Miller-Ensminger, Adriana Ene, Zubia Merchant, Aashaka Shah, Athina Gerodias, Anthony Biancofiori, Stacey Canchola, Stephanie Canchola, Emanuel Castillo, Tasnim Chowdhury, Nikita Gandhi, Sarah Hamilton, Kyla Hatton, Syed Hyder, Koty Krull, Demetrios Lagios, Thinh Lam, Kennedy Mitchell, Christine Mortensen, Amber Murphy, Joseph Richburg, Meghan Rokas, Suzanne Ryclik, Pauline Sulit, Thomas Szwajnos, Manuel Widuch, Jessica Willis, Mary Woloszyn, Bridget Brassil, Genevieve Johnson, Rita Mormando, Laura Maskeri, Mary Batrich, Nicole Stark, Jason W. Shapiro, Cesar Montelongo Hernandez, Swarnali Banerjee, Alan J. Wolfe, and Catherine Putonti

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Draft Genome Sequence of Aeromonas caviae UFMG-H8, Isolated from Urine from a Healthy Bovine Heifer (Gyr Breed), Silvia Giannattasio-Ferraz, Laura Maskeri, André P. Oliveira, Edel F. Barbosa-Stancioli, and Catherine Putoni

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Draft Genome Sequence of Citrobacter freundii UFMG-H9, Isolated from Urine from a Healthy Bovine Heifer (Gyr Breed), Silvia Giannattasio-Ferraz, Laura Maskeri, André P. Oliveira, Edel F. Barbosa-Stancioli, and Catherine Putoni

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Draft Genome Sequences of Three Enterococcus casseliflavus Strains Isolated from the Urine of Healthy Bovine Heifers (Gyr Breed), Silvia Giannattasio-Ferraz, Laura Maskeri, André P. Oliveira, Edel F. Barbosa-Stancioli, and Catherine Putoni

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Three Draft Genome Sequences of Staphylococcus Species Isolated from the Urine of Healthy Bovine Heifers (Gyr Breed), Silvia Giannattasio-Ferraz, Laura Maskeri, André P. Oliveira, Edel F. Barbosa-Stancioli, and Catherine Putoni

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Draft Genome Sequence of Enterobacter asburiae UFMG-H9, Isolated from Urine from a Healthy Bovine Heifer (Gyr Breed), Silvia Giannattasio-Ferraz, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Draft Genome Sequence of Klebsiella pneumoniae UMB8492, Isolated from the Female Urinary Tract, Suma Gondi, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Aerococcus urinae Isolated from Women with Lower Urinary Tract Symptoms: In Vitro Aggregation and Genome Analysis, Evann E. Hilt, Catherine Putonti, Krystal Thomas-White, Amanda L. Lewis, Karen L. Visick, Nicole M. Gilbert, and Alan J. Wolfe

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Draft Genome Sequences of Two Pseudomonas aeruginosa Isolates from the Female Urogenital Tract, Genevieve Johnson, Carine R. Mores, Alan J. Wolfe, and Catherine Putoni

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Draft Genome Sequence of Enterococcus faecalis UMB7780, Isolated from the Female Urinary Tract, Martin Kalski, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Draft Genome Sequence of Staphylococcus epidermidis UMB7765, Isolated from the Urobiome of a Woman with Recurrent Urinary Tract Infection, Lucy Kemper, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Draft Genome Sequence of Lactobacillus crispatus UMB1163, Isolated from the Female Urinary Tract, Fabeiha Khan, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Draft Genome Sequence of Actinomyces neuii UMB1295, Isolated from the Female Urinary Tract, Tijana Markovic, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Mimicking prophage induction in the body: induction in the lab with pH gradients, Taylor Miller-Ensminger, Andrea Garretto, Nicole Stark, and Catherine Putonti

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Introducing Lu-1, a Novel Lactobacillus jensenii Phage Abundant in the Urogenital Tract, Taylor Miller-Ensminger, Rita Mormando, Laura Maskeri, Jason W. Shapiro, Alan J. Wolfe, and Catherine Putoni

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Draft Genome Sequence of Lactobacillus jensenii Strain UMB7766, Isolated from the Female Bladder, Taylor Miller-Ensminger, Alan J. Wolfe, and Catherine Putoni

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Draft Genome Sequence of Streptococcus anginosus UMB7768, Isolated from a Woman with Recurrent UTI Symptoms, Sarah Miller, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Complete Genome Sequences of Streptococcus mitis Strains Isolated from the Oral Cavity and Urogenital Tract of a Woman and Her Male Sexual Partner, Carine R. Mores, Travis K. Price, Bridget Brassil, Catherine Putoni, and Alan J. Wolfe

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Optimizing Gene Expression Prediction and Omics Integration in Populations of African Ancestry, Paul Chukwuebuka Okoro

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Draft Genome Sequence of Antibiotic-Resistant Enterococcus faecalis Strain UMB0843, Isolated from the Female Urinary Tract, Natalia Purta, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Comparative Genomic Study of Lactobacillus jensenii and the Newly Defined Lactobacillus mulieris Species Identifies Species-Specific Functionality, Catherine Putoni, Jason W. Shapiro, Adriana Ene, Oleksandra Tsibere, and Alan J. Wolfe

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Draft Genome Sequence of Lactobacillus mulieris UMB9245, Isolated from the Female Bladder, Lidia Ramotowski, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Draft Genome Sequence of Lactobacillus jensenii UMB0836, Isolated from the Female Bladder, Isaac Rivera, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Draft Genome Sequence of Enterococcus faecalis UMB1309, Isolated from Catheterized Urine, Adam Schwartz, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Draft Genome Sequence of Streptococcus anginosus UMB0839, Isolated from the Female Urinary Tract, Thomas Scott, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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UPΦ phages, a new group of filamentous phages found in several members of Enterobacteriales, Jason Shapiro and Catherine Putonti

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Draft Genome Sequence of Streptococcus anginosus UMB1296, Isolated from the Female Urinary Tract, Sara Temelkova, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Draft Genome Sequence of Staphylococcus epidermidis UMB8493, Isolated from the Female Urinary Tract, Anthony Truckenbrod, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putonti

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Draft Genome Sequence of Lactobacillus mulieris UMB7784, Isolated from the Female Urinary Tract, Oleksandra Tsibere, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

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Draft Genome Sequence of Lactobacillus jensenii UMB0847, Isolated from the Female Urinary Tract, Ella West-Pelak, Taylor Miller-Ensminger, Adelina Voukadinova, Alan J. Wolfe, and Catherine Putoni

Submissions from 2019

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Pseudomonas Diversity Within Urban Freshwaters, Mary Batrich, Laura Maskeri, Ryan Schubert, Brian Ho, Melanie Kohout, Malik Abdeljaber, Ahmed Abuhasna, Mutah Kholoki, Penelope Psihogios, Tahir Razzaq, Samrita Sawhney, Salah Siddiqui, Eyad Xoubi, Alexandria Cooper, Thomas Hatzopoulos, and Catherine Putonti

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Bacteriophages of the Lower Urinary Tract, Andrea Garretto, Taylor Miller-Ensminger, Alan J. Wolfe, and Catherine Putonti

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Characterization of the φCTX-like Pseudomonas Aeruginosa Phage Dobby Isolated from the Kidney Stone Microbiota, Genevieve Johnson, Alan J. Wolfe, and Catherine Putonti

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Characterization of the φCTX-like Pseudomonas aeruginosa phage Dobby Isolated from the Kidney Stone Microbiota, Genevieve Johnson, Alan J. Wolfe, and Catherine Putonti

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virMine: Automated Detection of Viral Sequences from Complex Metagenomic Samples, Catherine Putonti, Andrea Garretto, and Thomas Hatzopoulos

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Genome Sequence of Pseudomonas Phage UMP151, Isolated from the Female Bladder Microbiota, Catherine Putonti and Genevieve Johnson

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Draft Genome Sequence of Clinical Isolate Alcaligenaceae sp. Strain 429, Catherine Putonti, Michael Zilliox, and Paul Schreckenberger

Submissions from 2018

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Gene-Based Association Study for Lipid Traits in Diverse Cohorts Implicates BACE1 and SIDT2 Regulation in Triglyceride Levels, Angela Andaleon, Lauren S. Mogil, and Heather Wheeler

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Draft Genome Sequence of the Siderophore-Degrading Soil Bacterium Mesorhizobium loti Strain LU, Domenic Castignetti, Nathaniel Polley, and Catherine Putonti

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Detecting Viral Genomes in the Female Urinary Microbiome, Andrea Garretto, Krystal Thomas-White, Alan J. Wolfe, and Catherine Putonti

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S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences, Laurynas Kalensinskas, Evan Cudone, Yuriy Fofanov, and Catherine Putonti

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S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences, Laurynas Kalesinskas, Evan Cudone, Yuriy Fofanov, and Catherine Putonti

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Characterization of a Protozoan Phosducin-like Protein-3 (PhLP-3) Reveals Conserved Redox Activity, Rachel L. Kooistra, Robin David, Ana C. Ruiz, Kyle J. Haselton, Kaitlyn Kiernan, Andrew M. Blagborough, Ligin Solamen, Kenneth W. Olsen, Catherine Putonti, and Stefan M. Kanzok

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Characterization of a protozoan Phosducin-like protein-3 (PhLP-3) reveals conserved redox activity, Rachel L. Kooistra, Robin David, Ana C. Ruiz, Sean W. Powers, Kyle J. Haselton, Kaitlyn Kiernan, Andrew M. Blagborough, Ken W. Olsen, Catherine Putonti, and Stefan M. Kanzok

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Characterization of a Protozoan Phosducin-like Protein-3 (PhLP-3) Reveals Conserved Redox Activity, Rachel L. Kooistra; Robin David; Ana C. Ruiz; Sean W. Powers; Kyle J. Haselton; Kaitlyn Kiernan; Andrew M. Blagborough; Ligin Solamen; Kenneth W, Olsen; Catherine Putonti; and Stefan M. Kanzok

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The Evolution of Molecular Compatibility between Bacteriophage ΦX174 and its Host, Alexander Kula, Joseph Saelens, Alyxandria M. Schubert, Michael Travisano, and Catherine Putonti

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Bacteriophages of the Urinary Microbiome, Taylor Miller-Ensminger, Andrea Garretto, Jonathon Brenner, Krystal Thomas-White, Adriano Zambom, Alan J. Wolfe, and Catherine Putonti

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Genetic Architecture of Gene Expression Traits Across Diverse Populations, Lauren S. Mogil, Angela Andaleon, Alexa Badalamenti, Scott P. Dickinson, Xiuqing Guo, Jerome I. Rotter, W. C. Johnson, Hae Kyung Im, Yongmei Liu, and Heather E. Wheeler

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Draft Genome Sequence of an Active Heterotrophic Nitrifier-Denitrifier, Cupriavidus pauculus UM1, Catherine Putonti, Nathaniel Polley, and Domenic Castignetti

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Draft Genome Sequence of an Active Heterotrophic Nitrifier-Denitrifier, Cupriavidus pauculus UM1, Catherine Putonti, Nathaniel Polley, and Domenic Castignetti

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Minimum Information about an Uncultivated Virus Genome (MIUViG), Simon Roux, Evelien M. Adriaenssens, Bas E. Dutilh, Eugene V. Koonin, Andrew M. Kropinski, Mart Krupovic, Jens H. Kuhn, Rob Lavigne, J Rodney Brister, Arvind Varsani, Clara Amid, Ramy K. Aziz, Seth R. Bordenstein, Peer Bork, Mya Breitbart, Guy R. Cochrane, Rebecca A. Daly, Christelle Desnues, Melissa B. Duhaime, Joanne B. Emerson, François Enault, Jed A. Fuhrman, Pascal Hingamp, Philip Hugenholtz, Bonnie L. Hurwitz, Natalie N. Ivanova, Jessica M. Labonté, Kyung-Bum Lee, Rex R. Malmstrom, Manuel Martinez-Garcia, Ilene Karsch Mizrachi, Hiroyuki Ogata, David Páez-Espino, Marie-Agnès Petit, Catherine Putonti, Thomas Rattei, Alejandro Reyes, Francisco Rodriguez-Valera, Karyna Rosario, Lynn Schriml, Frederik Schulz, Grieg F. Steward, Matthew B. Sullivan, Shinichi Sunagawa, Curtis A. Suttle, Ben Temperton, Susannah G. Tringe, Rebecca Vega Thurber, Nicole S. Webster, Katrine L. Whiteson, Steven W. Whilhelm, K Eric Wommack, Tanja Woyke, Kelly C. Wrighton, Pelin Yilmaz, Takashi Yoshida, Mark J. Young, Natalya Yutin, Lisa Zeigler Allen, Nikos C. Kyrpides, and Emiley A. Eloe-Fadrosh

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Gene Co-occurrence Networks Reflect Bacteriophage Ecology and Evolution, Jason W. Shapiro and Catherine Putonti

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Culturing of Female Bladder Bacteria Reveals an Interconnected Urogenital Microbiota, Krystal Thomas-White, Samuel C. Forster, Nitin Kumar, Michelle Van Kuiken, Catherine Putonti, Mark D. Stares, Evann E. Hilt, Travis K. Price, Alan J. Wolfe, and Trevor D. Lawley

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Culturing of Female Bladder Bacteria Reveals an Interconnected Urogenital Microbiota, Krystal Thomas-White, Samuel C. Forster, Nitin Kumar, Michelle Van Kuiken, Catherine Putonti, Mark D. Stares, Evann E. Hilt, Travis K. Price, Alan J. Wolfe, and Trevor D. Lawley

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Pseudomonas PB1-Like Phages: Whole Genomes from Metagenomes Offer Insight into an Abundant Group of Bacteriophages, Siobhan C. Watkins, Emily Sible, and Catherine Putonti

Submissions from 2017

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Genetic Variants Contributing to Colistin Cytotoxicity: Identification of TGIF1 and HOXD10 Using a Population Genomics Approach, Michael T. Eadon, Ronald J. Hause, Amy L. Stark, Ying-Hua Cheng, Heather E. Wheeler, Kimberly S. Burgess, Eric A. Benson, Patrick N. Cunningham, Robert L. Bacallao, Pierre C. Dagher, Todd C. Skaar, and M. Eileen Dolan

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Draft Genome Sequence of Micrococcus luteus (Schroeter) Cohn (ATCC 12698), Catherine Putonti, Evan Cudone, Laurynas Kalesinskas, Kathleen C. Engelbrecht, David W. Koenig, and Alan J. Wolfe

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Draft Genome Sequence of Escherichia coli K-12 (ATCC 10798), Catherine Putonti, Daniela Dimitrova, Kathleen C. Engelbrecht, David W. Koenig, and Alan J. Wolfe

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Draft Genome Sequence of Escherichia coli K-12 (ATCC 29425), Catherine Putonti, Kathleen C. Engelbrecht, David W. Koenig, and Alan J. Wolfe

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Draft Genome Sequence of Enterococcus faecalis ATCC BAA-2128, Catherine Putonti, Laurynas Kalesinskas, Evan Cudone, Kathleen C. Engelbrecht, David W. Koenig, and Alan J. Wolfe

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Draft Genome Sequences of Two ATCC Staphylococcus aureus subsp. aureus Strains, Catherine Putonti, Laurynas Kalesinskas, Evan Cudone, Kathleen C. Engelbrecht, David W. Koenig, and Alan J. Wolfe

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Draft Genome Sequence of Staphylococcus epidermidis (Winslow and Winslow) Evans (ATCC 14990), Catherine Putonti, Laurynas Kalesinskas, Evan Cudone, Alan J. Wolfe, Kathleen C. Engelbrecht, and David W. Koenig

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The Role of Phage tRNAs in the Evolution of Codon Usage Biases in Giant Pseudomonas Phage phiKZ and EL, Stephanie Steidel

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The Use of Informativity in the Development of Robust Viromics-based Examinations, Siobhan C. Watkins and Catherine Putonti

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Clinical and Genome-Wide Analysis of Cisplatin-Induced Peripheral Neuropathy in Survivors of Adult-Onset Cancer., Heather E. Wheeler

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Application of Stem Cell Derived Neuronal Cells to Evaluate Neurotoxic Chemotherapy, Claudia Wing, Masaaki Komatsu, Shannon M. Delaney, Matthew Krause, Heather E. Wheeler, and M. Eileen Dolan

Submissions from 2016

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Freshwater Metaviromics and Bacteriophages: A Current Assessment of the State of the Art in Relation to Bioinformatic Challenges, Katherine Bruder, Kema Malki, Alexandria Cooper, Emily Sible, Jason W. Shapiro, Siobhan C. Watkins, and Catherine Putonti

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Comprehensive Audiometric Analysis of Hearing Impairment and Tinnitus After Cisplatin-Based Chemotherapy in Survivors of Adult-Onset Cancer., Robert D. Frisina, Heather E. Wheeler, Sophie D. Fossa, Sarah L. Kerns, Chunkit Fung, Howard D. Sesso, Patrick O. Monahan, Darren R. Feldman, Robert Hamilton, David J. Vaughn, Clair J. Beard, Amy Budnick, Eileen M. Johnson, Shirin Ardeshir-Rouhani-Fard, Lawrence H. Einhorn, Steven E. Lipshultz, M. Eileen Dolan, and Lois B. Travis

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PhagePhisher: a Pipeline for the Discovery of Covert Viral Sequences in Complex Genomic Datasets, Thomas Hatzopoulos, Siobhan C. Watkins, and Catherine Putonti

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Draft Genome Sequence for a Urinary Isolate of Nosocomiicoccus Ampullae, Evann Elizabeth Hilt, Travis Kyle Price, Katherine Diebel, Catherine Putonti, and Alan J. Wolfe

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Genomes of Gardnerella Strains Reveal an Abundance of Prophages within the Bladder Microbiome, Kema Malki, Jason W. Shapiro, Travis Kyle Price, Evann Elizabeth Hilt, Krystal Thomas-White, Trina Sircar, Amy B. Rosenfeld, Michael J. Zilliox, Alan J. Wolfe, and Catherine Putonti

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Seven Bacteriophages Isolated from the Female Urinary Microbiota, Kema Malki, Emily Sible, Alexandria Cooper, Andrea Garretto, Katherine Bruder, Siobhan C. Watkins, and Catherine Putonti

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Genome Sequences and Annotation of Two Urinary Isolates of E. Coli, Travis Kyle Price, Arya Mehtash, Laurynas Kalesinskas, Kema Malki, Evann Elizabeth Hilt, Catherine Putonti, and Alan J. Wolfe

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Draft Genome for a Urinary Isolate of Lactobacillus crispatus, Travis Kyle Price, Majed Shaheen, Laurynas Kalesinskas, Kema Malki, Evann Elizabeth Hilt, Catherine Putonti, and Alan J. Wolfe

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Freshwater Metaviromics and Bacteriophages: A Current Assessment of the State of the Art in Relation to Bioinformatic Challenges, Catherine Putonti, Katherine Bruder, Kema Malki, Alexandria Cooper, Emily Sible, Jason W. Shapiro, and Siobhan C. Watkins

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Draft Genome Sequence for a Urinary Isolate of Nosocomiicoccus ampullae, Catherine Putonti, Evann E. Hilt, Travis K. Price, Katherine Diebel, and Alan J. Wolfe

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A Polyglot Approach to Bioinformatics Data Integration: A Phylogenetic Analysis of HIV-1, Steven Reisman, Thomas Hatzopoulous, Konstantin Läufer, George K. Thiruvathukal, and Catherine Putonti

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18S rDNA Dataset Profiling Microeukaryotic Populations Within Chicago Area Nearshore Waters, Daniel Searle, Emily Sible, Alexandria Cooper, and Catherine Putonti

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Pharmacogenetic Discovery in CALGB (Alliance) 90401 and Mechanistic Validation of a VAC14 Polymorphism That Increases Risk of Docetaxel-Induced Neuropathy, Heather E. Wheeler

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Variants in WFS1 and Other Mendelian Deafness Genes are Associated with Cisplatin-Associated Ototoxicity, Heather E. Wheeler, Eric R. Gamazon, Robert Frisina, Carlos Perez-Cervantes, Omar El Charif, Brandon Mapes, Sophie D. Fossa, Darren Feldman, Robert Hamilton, David J. Vaughn, Clair Beard, Chunkit Fung, Chiristian Kollmannsberger, Jeri Kim, Taisei Mushiroda, Michiaki Kubo, Shirin Ardeshir-Rouhani-Fard, Lawrence H. Einhorn, Nancy Cox, M. Eileen Dolan, and Lois Travis

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Survey of the Heritability and Sparse Architecture of Gene Expression Traits across Human Tissues., Heather E. Wheeler, Kaanan P. Shah, Jonathon Brenner, Tzintzuni Garcia, Keston Aquino-Michaels, GTEx-Consortium, Nancy J. Cox, Dan L. Nicolae, and Hae Kyung Im

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Clusters of Alpha Satellite on Human Chromosome 21 Are Dispersed Far onto the Short Arm and Lack Ancient Layers, William Ziccardi, Chongjian Zhao, Valery Shepelev, Lev Uralsky, Ivan Alexandrov, Tatyana Andreeva, Evgeny Rogaev, Christopher Bun, Emily Miller, Catherine Putonti, and Jeffrey Doering

Submissions from 2015

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Finding Function in the Unknown, Kelly Boyd, Emma Highland, Amanda Misch, Amber Hu, Sushma Reddy, and Catherine Putonti

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HAsh-MaP-ERadicator: Filtering Non-Target Sequences from Next Generation Sequencing Reads, Jonathon Brenner and Catherine Putonti

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The Genetic Architecture of Fluctuating aSymmetry of Mandible Size and Shape in a Population of Mice: Another Look, James M. Cheverud, Larry J. Leamy, Christian Peter Klingenberg, Emma Sherratt, and Jason B. Wolf

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Identification of eQTLs for Hepatic Xbp1s and Socs3 Gene Expression in Mice Fed a High-Fat, High Caloric Diet, James M. Cheverud, Sarina Pasricha, Jane Kenney-Hunt, Kristy Anderson, Naderah Jafari, Rabea A. Hall, Frank Lammert, and Richard M. Green

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A Gene-Based Association Method for Mapping Traits Using Reference Transcriptome Data, Eric R. Gamazon, Heather Wheeler, Kaanan P. Shah, Sahar V. Mozaffari, Keston Aquino-Michaels, Robert J. Carroll, Anne E. Eyler, Joshua C. Denny, GTEx Consortium, Dan L. Nicolae, Nancy J. Cox, and Hae Kyung Im

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Hands-on Python Tutorial, Andrew N. Harrington

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Survey of Microbial Populations within Lake Michigan Nearshore Waters at Two Chicago Public Beaches, Kema Malki, Katherine Bruder, and Catherine Putonti

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Bacteriophages isolated from Lake Michigan demonstrate broad host-range across several bacterial phyla, Kema Malki, Alex Kula, Katherine Bruder, Emily Sible, Thomas Hatzopoulos, Stephanie Steidel, Siobhan C. Watkins, and Catherine Putonti

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A Polyglot Approach to Bioinformatics Data Integration: a Phylogenetic Analysis of HIV-1, Steven Reisman, Thomas Hatzopoulos, Konstantin Laufer, George K. Thiruvathukal, and Catherine Putonti